(Google Scholar)
Publications
Oral Presentations
Posters
(Nominated to present at Centennial Poster Session)
(Award for the best poster)
Publications
- TYJ Kono, L Lei, CH Shih, PJ Hoffman, PL Morrell, JC Fay. Comparative genomics approaches accurately predict deleterious variants in plants. G3 (2018) (In press).
- Y Song, S Endepols, N Klemann, D Richter, FR Matuschka, CH Shih, MW Nachman and MH Kohn. Adaptive introgression of anticoagulant rodent poison resistance by hybridization between old world mice. Current Biology (2011) 21:1296-1301
- S Li, CH Shih, and MH Kohn. Functional and evolutionary correlates of gene constellations in the Drosophila genome. BMC Genomics (2010) 11: 322
- CH Su, CH Shih, TH Chang, and HK Tsai. Genome-wide analysis of the cis-regulatory modules of divergent gene pairs in yeast. Genomics (2010) 96: 352-361
- HK Tsai, C Su, MY Lu, CH Shih, and D Wang. Co-expression of adjacent genes in yeast cannot be simply attributed to shared regulatory system. BMC Genomics (2007) 8: 352
- HK Tsai, MY Chou, CH Shih, GTW Huang, TH Chang, and WH Li. MYBS: A comprehensive web server for mining transcription factor binding sites in yeast. Nuclear Acid Research (2007) 35 (Web Server Issue): W221-226
- N Hsieh, CH Shih, HY Chen, MC Wu, WC Chen, and CW Li. Effects of Tamm-Horsfall protein on the protection of MCDK cells from oxalate induced free radical injury. Urological Research (2003) 31: 10-16
- WC Chen, HS Lin, HY Chen, CH Shih, and CW Li. Effects of Tamm-Horsfall protein and albumin on calcium oxalate crystallization and importance of sialic acid. Molecular Urology (2001) 5: 1-5.
Oral Presentations
- Cis-acting variation in gene expression dynamics within and between Saccharomyces species. Workshop: Beyond cerevisiae: Exploiting yeast diversity in nature to understand genome evolution in diverse environments. THE ALLIED GENETICS CONFERENCE 2016 (TAGC). Orlando FL, U.S.A. (2016)
- Gene interactions as a predictor of non-random association among protein-coding genes. Gordon Research Seminar in Quantitative Genetics & Genomics. Galveston TX, U.S.A. (2013)
- Hybridization between rhesus and cynomolgus macaques as inferred from analyses of published genomic resources. Genomic Research Center, Academic Sinica, Taiwan. (2012)
- Exploration effects of genetic interactions on polymorphism and divergence. Institute of Information Science, Academia Sinica (2012)
- Hybridization between rhesus and cynomolgus macaques as inferred from analysis of published genomic resources. The 4th annual UH-Rice Ecology and Evolution graduate student symposium (2010)
Posters
- CH Shih, J Fay. Cis-acting variation in gene expression dynamics within and between Saccharomyces species. THE ALLIED GENETICS CONFERENCE 2016 (TAGC).
- CH Shih, S Li, HJ Park, LK Nakhleh, MH Kohn. Gene interaction networks perspective enhance understanding enigmatic evolutionary phenomena. Keck Annual Research Conference (2012).
- CH Shih, S Li, HJ Park, LK Nakhleh, MH Kohn. Gene interaction networks perspective enhance understanding enigmatic evolutionary phenomena. Rice University Centennial Poster Session (2012).
(Nominated to present at Centennial Poster Session)
- CH Shih and MH Kohn. Hybridization between rhesus and cynomolgus macaques as inferred from analyses of published genomic resources. The 34th annual meeting of the American Society of Primatologists (2011).
(Award for the best poster)
- CH Shih, S Li, HJ Park, LK Nakhleh, and MH Kohn. The utility of the gene-gene interaction network to predict linkage disequilibrium in the human haplotype map. Systems Biology: Networks (2009).
- CH Shih, S Li, HJ Park, LK Nakhleh, and MH Kohn. The potential to predict linkage disequilibrium in the human haplotype map by gene-gene interaction network. Computational & Theoretical Biology Symposium (2008).
- CH Shih, HJ Park, and S Li. 8.63% functionally interacting genes co-locate on human haplotypes. The 4th Annual Institute of Biosciences and Bioengineering Symposium (IBB Symposium 2008).
- HP Lee, TF Sheu, YT Tsai, CH Shih, and CY Tang. Efficient discovery of unique signatures on whole-genome EST database. The 20th Annual ACM Symposium on Applied Computing (2005).
- HP Lee H, TF Sheu, YT Tsai, CH Shih, and CY Tang. An efficient algorithm for unique signature discovery on whole-genome EST databases. The IEEE Computational Systems Bioinformatics Conference (2004).
- HP Lee, YT Tsai, CH Shih, TF Sheu, and CY Tang. An IDC-based algorithm for efficient homology filtration with guaranteed seriate coverage. The IEEE Fourth Symposium on Bioinformatics and Bioengineering (2004).
- HP Lee, YT Tsai, CY Tang, CH Shih, and TF Sheu. A seriate coverage filtration approach for homology search. The 19th ACM Symposium on Applied Computing (2004).
- HP Lee, YT Tsai, CH Shih, TF Sheu, and CY Tang. A novel approach for efficient query of single nucleotide variation in DNA databases. The 8th Annual International Conference on Research in Computational Molecular Biology (2004).